Category Archives: Scientific computing

CERN/ATLAS data processing on grids and GridFactory

In this post I’ll report on running the application “mc09_7TeV.107691….” from the GridPilot app store. In the case of NorduGrid and WLCG, the ATLAS software is preinstalled on the resources. In the case of GridFactory, the jobs run inside a CernVM appliance with ATLAS software loaded through the AFS network file system. The input dataset consisted of 26 files totaling … Read the rest

CERN/ATLAS Monte Carlo simulation on grids and clouds

In previous posts we saw that I/O bound jobs ran ~3 faster on standard SATA disks than on network file systems and block devices (GPFS, NFS, EBS). This post reports on CPU bound jobs. I ran standard ATLAS Monte Carlo simulation on both grid and cloud resources: imported the ATLAS simulation app and ran the default 100 small jobs, each … Read the rest

CERN/ATLAS boildown on clouds

In this post, I’ll take a look at some more runs of the “atlas_d3pd_boildown” application available in the GridPilot app store. The difference w.r.t. the runs described in a previous post is that this time I ran on cloud as opposed to grid resources. On dedicated hardware and on two public clouds, Amazon’s EC2 and Cabo’s Irigo cloud, I … Read the rest

POV-Ray II – no free lunch on EC2

In this post, I’ll take a look at some runs of the POV-Ray application available in the GridPilot app store: To import this app, just choose “File → Import application”, navigate to the relevant folder and click “OK”.

This application is a bit more sophisticated than the one used for the simple benchmarking described in a previous post. Now, … Read the rest

Feature extraction of medical images on grids and clouds

This example is special in that it does not depend on any preinstalled software package (runtime environment), but includes a precompiled binary. This binary will of course only for certain run on the system it was compiled on. We compiled on Debian Sarge and Scientific Linux 5 and run on all back-ends: a local virtual machine, GridFactory without virtualization and … Read the rest

MP3 encoding on GridFactory

Here is a video I put together to demo how to use GridPilot to run computations on a GridFactory cluster:




The demo uses the default input files – which are 12 royalty free music files found on incompetech.com. This can be changed – by right-clicking on the input dataset, “music_files”, and choosing “Import file(s)”. If you’ve already imported the … Read the rest

MP4 transcoding on EC2 with GridPilot and GridFactory

Things to Come  The Last Man on Earth  Sintel  Elephant’s Dream

Given the popularity of the iPhone, an interesting use of a batch system is conversion of movie files from the AVI to the MPG4 format. In this post I’ll explain 3 ways doing this with GridPilot. Which way you prefer will likely depend on the number and size of files you want to convert and the power … Read the rest

POV-Ray rendering

To gauge the performance of both GridFactory and virtualization layers in a high-CPU/low-throughput setting, we chose the standard ray-tracing program POV-Ray and a standard benchmarking image, shipped with the program.

Povray default benchmark image
The standard image that was rendered.

This example is a fairly naive benchmarking exercise consisting simply in rendering the same image with POV-Ray 20 times. Each POV-Ray job used a … Read the rest

CERN/ATLAS n-tuple boildown on NorduGrid, WLCG and GridFactory

Plot of ATLAS data created with GridPilot from official datasets.

This example demonstrates the use of GridPilot in data processing in high energy physics (HEP). It makes extensive use of some HEP-specific technologies, that are incapsulated in GridPilot in the form of plugins: the ATLAS DB plugin and the NG and GLite computing system plugins. The jobs chosen are so-called … Read the rest

Mini-symposium on cloud computing – update

Auditorium A

Niels Bohr Institute.
Photo by Marcos Vieira.

This is a follow-up to a previous post.

VENUE: Niels Bohr Institute, Blegdamsvej 17, 2100, Copenhagen

TIME: May 12, 2009, 14:00

PROGRAM

14:10 – 14:40, “Cloud and Virtualization to Support Grid Computing”,
Ass. Professor Ruben S. Montero , DSA research group, Universidad de Complutense, Madrid

14:40 – 15:00, … Read the rest

Feature on International Science Grid this Week

To inform some of the stakeholders about the background and scope of the project “grid.dk”, I wrote a piece featured on International Science Grid This Week.

The message is that we are aware of the the difficulties other projects have had in attracting users. Our take at this will be to experiment with new user interfaces and focus on … Read the rest